NEWS!

  • 28.09.2022: The Best Paper Award has been awarded to Liang et al. for their paper "Transforming connectomes to 'any' parcellation via graph matching". Congratulations!
  • 27.09.2022: MICCAI GRAIL 2022 has concluded. We would like to thank all speakers and all audience members for their participation, both virtual and in-person.
  • 05.09.2022: The program has been updated, with 6 oral presentations and the previously announced 4 keynote talks.
  • 01.09.2022: Sponsor announcement: The GRAIL 2022 best paper will be awarded with a GPU (GeFore RTX 3080 Ti), sponsored by NVIDIA!
  • 29.07.2022: The review period has been finalized! We accepted 6 papers to GRAIL, the program will be updated soon, once additional information from MICCAI workshop chairs are received.
  • 26.07.2022: Author notification deadline extended: The new deadline is Friday July 29th, 23:59 pm, PST. The new deadline for camera-ready versions is Wednesday August 3rd, 23:59 pm, PST.
  • 23.06.2022: Deadline extension announced: The new deadline is Tuesday July 5th, 23:59 pm, PST. The new deadline for reviews is Thursday July 21th, 23:59 pm, PST.
  • 07.04.2022: The date and time for the workshop have been released by MICCAI org. New date: 18th Sept 2022, new time: 8:00am-11:30am.
  • 07.04.2022: The GRAIL Website is up and running!

SCOPE

GRAIL 2022 is the fourth international workshop on GRaphs in biomedicAl Image anaLysis, organised as a satellite event of MICCAI 2022 in Singapore.

Graphs are powerful mathematical structures that provide a flexible and scalable framework to model objects and their interactions in a readily interpretable fashion. As a result, an important body of work has been developed around different methodological aspects of graphs including, but not limited to, graphical models, graph-theoretical algorithms, spectral graph analysis, graph dimensionality reduction, and graph-based network analysis. Critically, since 2017, the field has experienced a steep increase in research due to the nascency of geometric deep learning, which married principles of graph signal processing with the latest advancements in deep neural networks. Applications of GNNs in medicine are numerous, ranging from medical imaging and shape understanding, brain connectomics, population models and patient multi-omics to discovery and design of novel drugs and therapeutics. In the leading computer vision and ML conferences (CVPR, ICLR, NeurIPS), GNNs have been among the hottest topics in 2021 and will likely increase in interest in 2022. With this workshop, we aim to provide a platform for understanding and application of graph-based models as versatile and powerful tools in biomedical image analysis and beyond. Our goal is to bring together scientists that use and develop graph-based models, and encourage the application of these models to difficult clinical problems within a variety of biomedical data contexts. Compared to our previous GRAIL installments, we specifically encourage submissions in the areas of explainable GNNs, graph models in computer-aided surgery/intervention, unstructured medical big data, and semantic knowledge (scene/knowledge graphs).

In more detail, the scope of methodology topics includes but is not limited to:

  • Deep/machine learning on graphs with regular and irregular structures
  • Probabilistic graphical models for biomedical data analysis
  • Signal processing on graphs for biomedical image analysis, including non-learning based approaches
  • Explainable AI (XAI) methods in geometric deep learning
  • Big data analysis with graphs
  • Semantic graph research in medicine: Scene graphs and knowledge graphs
  • Modeling and applications of graph symmetry and equivariance
  • Graph generative models
  • Combination of graphs with other SOTA domains (e.g. self-supervised learning, federated learning)

Applications covered include but are not limited to:

  • Image segmentation, registration, classification
  • Graph representations in pathology imaging and whole-slide image analysis
  • Graph-based approaches in intra-operative surgical support
  • Graph-based shape modeling and dimensionality reduction
  • Graphs for large scale patient population analyses
  • Combining multimodal/multi-omics data through graph structures
  • Graph analysis of brain networks and connectomics
  • Preliminary Program - Singapore Time (SGT/UTC+8)

    8:00 – 08:05 Welcome and opening remarks
    08:05 – 08:35 Keynote 1:
    Prof. Dr. Marinka Zitnik
    "Trustworthy AI with GNN Explainers"
    08:35 – 09:05 Oral session 1:
    • 08:35 - 08:45:
      Modular Graph Encoding and Hierarchical Readout for Functional Brain Network based eMCI Diagnosis.
      Lang Mei, Mianxin Liu, Lingbin Bian, Yuyao Zhang, Feng Shi, Han Zhang, Dinggang Shen
    • 08:45 - 08:55:
      Bayesian Filtered Generation of Post-surgical Brain Connectomes on Tumor Patients.
      Joan Falco-Roget, Alessandro Crimi
    • 08:55 - 09:05:
      Deep Cross-Modality and Resolution Graph Integration for Universal Brain Connectivity Mapping and Augmentation.
      Ece Cinar, Sinem Elif Haseki, Alaa Bessadok, Islem Rekik
    09:05 – 09:35 Keynote 2:
    Prof. Dr. Islem Rekik
    "Debunking the brain connectivity using predictive learning from limited data"
    09:35 – 09:50 Coffee break
    09:50 – 10:20 Keynote 3:
    M.Sc. Mark O'Donoghue
    "Knowledge Graphs for Drug Discovery"
    10:20 – 10:50 Oral session 2:
    • 10:20 – 10:30:
      Using Hierarchically Connected Nodes and Multiple GNN Message Passing Steps to Increase the Contextual Information in Cell-Graph Classification.
      Joe P Sims, Heike I. Grabsch, Derek Magee
    • 10:30 – 10:40:
      TaG-Net: Topology-aware Graph Network for Vessel Labeling.
      Linlin Yao, Zhong Xue, Yiqiang Zhan, Yuntian Chen, Lizhou Chen, Bin Song, Qian Wang, Feng Shi, Dinggang Shen
    • 10:40 – 10:50:
      Transforming connectomes to "any" parcellation via graph matching.
      Qinghao Liang, Javid Dadashkarimi, Wei Dai, Amin Karbasi, Joseph Chang, Harrison H. Zhou, Dustin Scheinost
    10:50 – 11:20 Keynote 4:
    Prof. Dr. Xavier Bresson
    "GNN trends in 2022"
    11:20 – 11:30 Award ceremony

    Keynote Speakers

    Prof. Dr. Marinka Zitnik
    Harvard Medical School

    Talk title: Trustworthy AI with GNN Explainers

    Marinka Zitnik (ZitnikLab) is an Assistant Professor at Harvard University with appointments in the Department of Biomedical Informatics, Broad Institute of MIT and Harvard, and Harvard Data Science. Dr. Zitnik has published extensively in top AI/ML venues and leading scientific journals. She has organized numerous conferences in the nexus of AI, deep learning, drug discovery, and biomedical AI at leading conferences (NeurIPS, ICLR, ICML, ISMB, AAAI, WWW), where she is also on the organizing committees. She is an ELLIS Scholar in the European Laboratory for Learning and Intelligent Systems (ELLIS) Society and a member of the Science Working Group at NASA Space Biology. Her research won best paper and research awards from the International Society for Computational Biology, Bayer Early Excellence in Science Award, Amazon Faculty Research Award, Roche Alliance with Distinguished Scientists Award, Rising Star Award in Electrical Engineering and Computer Science, and Next Generation in Biomedicine Recognition, being the only young scientist with such recognition in both EECS and Biomedicine.

    Prof. Dr. Islem Rekik
    Technical University of Istanbul

    Talk title: Debunking the brain connectivity using predictive learning from limited data

    Islem Rekik is the Director of the Brain And SIgnal Research and Analysis (BASIRA) laboratory. Together with BASIRA members, she conducted more than 80 cutting-edge research projects cross-pollinating AI and healthcare —with a sharp focus on brain imaging and neuroscience. She is also a co/chair/organizer of more than 20 international first-class conferences/workshops/competitions (e.g., Affordable AI 2021, Predictive AI 2018-2021, Machine Learning in Medical Imaging 2021, WILL competition 2021). In addition to her 120+ high-impact publications, she is a strong advocate of equity, inclusiveness and diversity in research. She is the former president of the Women in MICCAI (WiM) and the co-founder of the international RISE Network to Reinforce Inclusiveness & diverSity and Empower minority researchers in Low-Middle Income Countries (LMIC).

    M.Sc. Mark O'Donoghue
    AstraZeneca

    Talk title: Knowledge Graphs for Drug Discovery

    BIKG (Biological Insights Knowledge Graph) is AstraZeneca's internal Knowledge Graph that combines public data for drug development and internal data sources to provide insights for a range of tasks: from identifying new targets to repurposing existing drugs. The BIKG team also develops an evolving collection of graph machine learning models, recommendation systems, and easy-to-use tools that leverage BIKG to deliver novel hypotheses. Mark O'Donoghue has a background in Mathematics and worked as a consultant in location strategy before finding his passion for biomedical data and bioinformatics. He joined AstraZeneca in 2021 as a Bioinformatics Data engineer in the BIKG team.

    Prof. Dr. Xavier Bresson
    National University Singapore

    Talk title: GNN trends in 2022

    Xavier Bresson is an Associate Professor in the Department of Computer Science at the National University of Singapore (NUS). His research focuses on Graph Deep Learning, a new framework that combines graph theory and neural networks to tackle complex data domains. In 2016, he received the USD 2.5M NRF Fellowship, the largest individual grant in Singapore, to develop this new framework. He was also awarded several research grants in the U.S. and Hong Kong. He co-authored one of the most cited works in this field (10th most cited paper at NeurIPS) and has significantly contributed to mature these emerging techniques. He has organized several workshops and tutorials on graph deep learning such as the recent IPAM'21 workshop on "Deep Learning and Combinatorial Optimization", the MLSys'21 workshop on "Graph Neural Networks and Systems", the IPAM'19 and IPAM'18 workshops on "New Deep Learning Techniques", and the NeurIPS'17, CVPR'17 and SIAM'18 tutorials on "Geometric Deep Learning on Graphs and Manifolds". He has been a regular invited speaker at universities and companies to share his work. He has also been a speaker at the KDD'21, AAAI'21 and ICML'20 workshops on "Graph Representation Learning", and the ICLR'20 workshop on "Deep Neural Models and Differential Equations". He has taught graduate courses on Deep Learning and Graph Neural Networks. Online profiles: Twitter, GScholar.

    Submit a paper

    Submissions should be done through the GRAIL CMT portal

    This year we will accept papers in the following format:

    • Complete papers: Papers describing original research with MICCAI length (max 8 pages text + max 2 pages references). Papers are eligible for the "Best Paper Award" and will be published in the GRAIL Open Proceedings and Lecture Notes in Computer Sciences (LNCS) series. Submissions should be anonymous, and formatted following the LNCS Style. Style. All complete papers will be peer-reviewed by 3 members of the program committee, with a double-blinded review process. The selection of the papers will be based on the significance of results, technical merit, relevance and clarity of presentation.

    GRAIL Best Paper Award

    The GRAIL 2022 Best Paper Award is awarded to:
    Qinghao Liang, Javid Dadashkarimi , Wei Dai, Amin Karbasi , Joseph Chang, Harrison H. Zhou, Dustin Scheinost
    for their paper:
    Transforming connectomes to "any" parcellation via graph matching.
    On behalf of the organizing committee, we congratulate the authors for their excellent paper contribution to GRAIL 2022. The best paper will be awarded with a GPU (GeForce RTX 3080 Ti), sponsored by NVIDIA.

    Important dates

    We have registered with the CMT system to publish the conference results as Springer Proceedings. Please use the LNCS templates. We accept full papers (max 8 pages text + max 2 pages references). Submit your paper here.
    05 July 2022 Submission deadline (extended), 23:59 pm, PST
    21 July 2022 Reviews due (extended), 23:59 pm, PST
    29 July 2022 Notification of acceptance (extended), 23:59 pm, PST
    03 August 2022 Camera ready paper versions due (extended), 23:59 pm, PST

    Organising Committee


    Past Events


    Sponsor

    We are very grateful to our sponsor NVIDIA for their valuable support and awarding a GPU to the best workshop presentation.